Difference between revisions of "Fabry:Sequence-based analyses/Journal"
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== Transmembrane helices == |
== Transmembrane helices == |
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| + | First we obtained the fasta sequences with the help of the bash script [ get_sequences.sh] |
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| + | |||
| + | ./[ get_sequences.sh] |
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| + | |||
| + | With these sequences we carried out a blast search, using Polyphobius' blastget. The output we used for a multiple sequence alignment derived from Kalign and used this MSA as input for PolyPhobius. All this was done with the script [ call_polyphobius.sh] |
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| + | ./[ call_polyphobius.sh] |
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| + | All pictures were autogenerated by the databases and programs. We executed an extra Polyphobius online search for each protein to obtain additional data and plots. |
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== Signal peptides == |
== Signal peptides == |
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Revision as of 14:26, 12 May 2012
Fabry Disease » Sequence-based analyses » Journal
Quidquid latine dictum sit, altum sonatur.
- - Whatever is said in Latin sounds profound.
Secondary structure
Disorder
Transmembrane helices
First we obtained the fasta sequences with the help of the bash script [ get_sequences.sh]
./[ get_sequences.sh]
With these sequences we carried out a blast search, using Polyphobius' blastget. The output we used for a multiple sequence alignment derived from Kalign and used this MSA as input for PolyPhobius. All this was done with the script [ call_polyphobius.sh]
./[ call_polyphobius.sh]
All pictures were autogenerated by the databases and programs. We executed an extra Polyphobius online search for each protein to obtain additional data and plots.
