Difference between revisions of "Task 3: odba human Sequence-based predictions"
From Bioinformatikpedia
(Created page with "= secondary structure = = Disorder = = Transmembrane helices = = Signal peptides = = GO terms =") |
(→secondary structure) |
||
| Line 1: | Line 1: | ||
= secondary structure = |
= secondary structure = |
||
| + | To predict secondary structure we use the following tools and compare the results: |
||
| + | -reprof |
||
| + | -psipred |
||
| + | -DSSP_Server |
||
| + | == reprof == |
||
| + | to run reprof from the command line the following command is used: |
||
| + | reprof -i seq.fasta |
||
| + | reprof then calculates the secondary structure prediction and provides an output file "seq.fasta.reprof" |
||
| + | Result: |
||
| + | |||
= Disorder = |
= Disorder = |
||
= Transmembrane helices = |
= Transmembrane helices = |
||
Revision as of 14:14, 12 May 2012
Contents
secondary structure
To predict secondary structure we use the following tools and compare the results:
-reprof -psipred -DSSP_Server
reprof
to run reprof from the command line the following command is used:
reprof -i seq.fasta
reprof then calculates the secondary structure prediction and provides an output file "seq.fasta.reprof" Result:
