Difference between revisions of "Sequence-based analyses of ARS A"

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(→‎Prediction of Disordered Regions)
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=== Prediction of Disordered Regions ===
  
=== Prediction of Disordered Regions ===
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==== SignalP ====
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<code>sudo /apps/signalp-3.0/signalp -t gram- ../BACR.fasta > BACR.signalp</code> <br/>
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<code>sudo /apps/signalp-3.0/signalp -t euk ../ARSA.fasta > ARSA.signalp </code> <br/>
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<code>sudo /apps/signalp-3.0/signalp -t euk ../A4.fasta > A4.signalp</code> <br/>
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<code>sudo /apps/signalp-3.0/signalp -t euk ../LAMP1.fasta > LAMP1.signalp</code> <br/>
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<code>sudo /apps/signalp-3.0/signalp -t euk ../INSL5.fasta > INSL5.signalp</code> <br/>
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<code>sudo /apps/signalp-3.0/signalp -t euk ../RET4.fasta > RET4.signalp</code> <br/>
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==== DISOPRED ====
  
==== DISOPRED ====

Revision as of 14:04, 25 May 2011

Additional Proteins

The following proteins are additionally used for the prediction of transmembrand alpha-helices and signal peptides and for the prediction of GO Terms:

Secondary Structure Prediction

DSSP

Prediction of Disordered Regions

SignalP

sudo /apps/signalp-3.0/signalp -t gram- ../BACR.fasta > BACR.signalp
sudo /apps/signalp-3.0/signalp -t euk ../ARSA.fasta > ARSA.signalp
sudo /apps/signalp-3.0/signalp -t euk ../A4.fasta > A4.signalp
sudo /apps/signalp-3.0/signalp -t euk ../LAMP1.fasta > LAMP1.signalp
sudo /apps/signalp-3.0/signalp -t euk ../INSL5.fasta > INSL5.signalp
sudo /apps/signalp-3.0/signalp -t euk ../RET4.fasta > RET4.signalp


DISOPRED

POODLE

IUPRED

Meta-Disorder

Prediction of transmembrane alpha-helices and signal peptides

Prediction of GO Terms

GOPET

Pfam

ProtFun 2.2

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