Difference between revisions of "Supplementary data normal mode glucocerebrosidase"

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This site provides additional data obtained in the [[Normal_Mode_Analysis_of_Glucocerebrosidase |normal mode analysis]] of glucocerebrosidase with different tools.
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== Anisotropic Network Model ==
  
== Anisotropic Network Model ==
   
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! Mode 10
  
! Mode 10
 
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|[[File:anm_glucocerebrosidase_mode0006.gif |thumb|center|150px|'''Figure 26:''' Normal Mode 6 calculated with ANM]] ||[[File:anm_glucocerebrosidase_mode0007.gif |thumb|center|150px|'''Figure 27:''' Normal Mode 7 calculated with ANM]] ||[[File:anm_glucocerebrosidase_mode0008.gif |thumb|center|150px|'''Figure 28:''' Normal Mode 8 calculated with ANM]] ||[[File:anm_glucocerebrosidase_mode0009.gif |thumb|center|150px|'''Figure 29:''' Normal Mode 9 calculated with ANM]] ||[[File:anm_glucocerebrosidase_mode0010.gif |thumb|center|150px|'''Figure 30:''' Normal Mode 10 calculated with ANM]]
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|[[File:anm_glucocerebrosidase_mode0006.gif |thumb|center|150px|Normal Mode 6 calculated with ANM]] ||[[File:anm_glucocerebrosidase_mode0007.gif |thumb|center|150px|Normal Mode 7 calculated with ANM]] ||[[File:anm_glucocerebrosidase_mode0008.gif |thumb|center|150px|Normal Mode 8 calculated with ANM]] ||[[File:anm_glucocerebrosidase_mode0009.gif |thumb|center|150px|Normal Mode 9 calculated with ANM]] ||[[File:anm_glucocerebrosidase_mode0010.gif |thumb|center|150px|Normal Mode 10 calculated with ANM]]
 
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|colspan="10"|'''Inter Distance Analysis'''
  
|colspan="10"|'''Inter Distance Analysis'''
 
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|[[File:anm_glucocerebrosidase_distmapscalar6.png |thumb|center|150px|'''Figure 31a: Distance Matrix''']]<br/>[[File:anm_glucocerebrosidase_mode6.png |thumb|center|150px|'''Figure 31b: Deformation Energy''']]<br/>Overall energy: 107191.169783064 || [[File:anm_glucocerebrosidase_distmapscalar7.png |thumb|center|150px|'''Figure 32a: Distance Matrix''']]<br/>[[File:anm_glucocerebrosidase_mode7.png |thumb|center|150px|'''Figure 32b: Deformation Energy''']]<br/>Overall energy: 112430.078797944 || [[File:anm_glucocerebrosidase_distmapscalar8.png |thumb|center|150px|'''Figure 33a: Distance Matrix''']]<br/>[[File:anm_glucocerebrosidase_mode8.png |thumb|center|150px|'''Figure 33b: Deformation Energy''']]<br/>Overall energy: 138939.176046648 || [[File:anm_glucocerebrosidase_distmapscalar9.png |thumb|center|150px|'''Figure 34a: Distance Matrix''']]<br/>[[File:anm_glucocerebrosidase_mode9.png |thumb|center|150px|'''Figure 34b: Deformation Energy''']]<br/>Overall energy: 156195.358655472 || [[File:anm_glucocerebrosidase_distmapscalar10.png |thumb|center|150px|'''Figure 35a: Distance Matrix''']]<br/>[[File:anm_glucocerebrosidase_mode10.png |thumb|center|150px|'''Figure 35b: Deformation Energy''']]<br/>Overall energy: 154660.33882932
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|[[File:anm_glucocerebrosidase_distmapscalar6.png |thumb|center|150px|Distance Matrix]]<br/>[[File:anm_glucocerebrosidase_mode6.png |thumb|center|150px|Deformation Energy]]<br/>Overall energy: 107191.169783064 || [[File:anm_glucocerebrosidase_distmapscalar7.png |thumb|center|150px|Distance Matrix]]<br/>[[File:anm_glucocerebrosidase_mode7.png |thumb|center|150px|Deformation Energy]]<br/>Overall energy: 112430.078797944 || [[File:anm_glucocerebrosidase_distmapscalar8.png |thumb|center|150px|Distance Matrix]]<br/>[[File:anm_glucocerebrosidase_mode8.png |thumb|center|150px|Deformation Energy]]<br/>Overall energy: 138939.176046648 || [[File:anm_glucocerebrosidase_distmapscalar9.png |thumb|center|150px|Distance Matrix]]<br/>[[File:anm_glucocerebrosidase_mode9.png |thumb|center|150px|Deformation Energy]]<br/>Overall energy: 156195.358655472 || [[File:anm_glucocerebrosidase_distmapscalar10.png |thumb|center|150px|Distance Matrix]]<br/>[[File:anm_glucocerebrosidase_mode10.png |thumb|center|150px|Deformation Energy]]<br/>Overall energy: 154660.33882932
 
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|colspan="10"|'''B-factors/mode fluctuations'''
  
|colspan="10"|'''B-factors/mode fluctuations'''
 
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| [[File:anm_glucocerebrosidase_bfmode6.png |thumb|center|150px|'''Figure 36: B-factors/mode fluctuations''']] || [[File:anm_glucocerebrosidase_bfmode7.png |thumb|center|150px|'''Figure 37: B-factors/mode fluctuations''']] || [[File:anm_glucocerebrosidase_bfmode8.png |thumb|center|150px|'''Figure 38: B-factors/mode fluctuations''']] || [[File:anm_glucocerebrosidase_bfmode9.png |thumb|center|150px|'''Figure 39: B-factors/mode fluctuations''']] || [[File:anm_glucocerebrosidase_bfmode10.png |thumb|center|150px|'''Figure 40: B-factors/mode fluctuations''']]
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| [[File:anm_glucocerebrosidase_bfmode6.png |thumb|center|150px|B-factors/mode fluctuations]] || [[File:anm_glucocerebrosidase_bfmode7.png |thumb|center|150px|B-factors/mode fluctuations]] || [[File:anm_glucocerebrosidase_bfmode8.png |thumb|center|150px|B-factors/mode fluctuations]] || [[File:anm_glucocerebrosidase_bfmode9.png |thumb|center|150px|B-factors/mode fluctuations]] || [[File:anm_glucocerebrosidase_bfmode10.png |thumb|center|150px|B-factors/mode fluctuations]]
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|}
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== Nomad-Ref ==
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The following six modes show the rigid body motions calculated with Nomad-Ref.
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{| border="0" style="text-align:center; border-spacing:0" cellpadding="2" cellspacing="3" align = "center"
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|-
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|[[File:Nomad_ref_mode1_glucocerebrosidase.gif |thumb|center|150px|Mode 1]]<br/>[[File:anm_glucocerebrosidase_nomad_mode01.png |thumb|center|150px|Elastic Network - Mode 1]]<br/>[[File:anm_glucocerebrosidase_nomad_mode1.png |thumb|center|150px|cRMS Plot - Mode 1]]||[[File:Nomad_ref_mode2_glucocerebrosidase.gif |thumb|center|150px|Mode 2]]<br/>[[File:anm_glucocerebrosidase_nomad_mode02.png |thumb|center|150px|Elastic Network - Mode 2]]<br/>[[File:anm_glucocerebrosidase_nomad_mode2.png |thumb|center|150px|cRMS Plot - Mode 2]]||[[File:Nomad_ref_mode3_glucocerebrosidase.gif |thumb|center|150px|Mode 3]]<br/>[[File:anm_glucocerebrosidase_nomad_mode03.png |thumb|center|150px|Elastic Network - Mode 3]]<br/>[[File:anm_glucocerebrosidase_nomad_mode3.png |thumb|center|150px|cRMS Plot - Mode 3]]||[[File:Nomad_ref_mode4_glucocerebrosidase.gif |thumb|center|150px|Mode 4']]<br/>[[File:anm_glucocerebrosidase_nomad_mode04.png |thumb|center|150px|Elastic Network - Mode 4]]<br/>[[File:anm_glucocerebrosidase_nomad_mode4.png |thumb|center|150px|cRMS Plot - Mode 4]]||[[File:Nomad_ref_mode5_glucocerebrosidase.gif |thumb|center|150px|Mode 5]]<br/>[[File:anm_glucocerebrosidase_nomad_mode05.png |thumb|center|150px|Elastic Network - Mode 5]]<br/>[[File:anm_glucocerebrosidase_nomad_mode5.png |thumb|center|150px|cRMS Plot - Mode 4]]||[[File:Nomad_ref_mode6_glucocerebrosidase.gif |thumb|center|150px|Mode 6]]<br/>[[File:anm_glucocerebrosidase_nomad_mode06.png |thumb|center|150px|Elastic network - Mode 6]]<br/>[[File:anm_glucocerebrosidase_nomad_mode6.png |thumb|center|150px|cRMS Plot - Mode 6]]
 
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Latest revision as of 09:27, 19 August 2011

This site provides additional data obtained in the normal mode analysis of glucocerebrosidase with different tools.


Anisotropic Network Model

Mode 6 Mode 7 Mode 8 Mode 9 Mode 10
Normal Mode 6 calculated with ANM
Normal Mode 7 calculated with ANM
Normal Mode 8 calculated with ANM
Normal Mode 9 calculated with ANM
Normal Mode 10 calculated with ANM
Inter Distance Analysis
Distance Matrix

Deformation Energy

Overall energy: 107191.169783064
Distance Matrix

Deformation Energy

Overall energy: 112430.078797944
Distance Matrix

Deformation Energy

Overall energy: 138939.176046648
Distance Matrix

Deformation Energy

Overall energy: 156195.358655472
Distance Matrix

Deformation Energy

Overall energy: 154660.33882932
B-factors/mode fluctuations
B-factors/mode fluctuations
B-factors/mode fluctuations
B-factors/mode fluctuations
B-factors/mode fluctuations
B-factors/mode fluctuations

Nomad-Ref

The following six modes show the rigid body motions calculated with Nomad-Ref.

Mode 1

Elastic Network - Mode 1

cRMS Plot - Mode 1
Mode 2

Elastic Network - Mode 2

cRMS Plot - Mode 2
Mode 3

Elastic Network - Mode 3

cRMS Plot - Mode 3
Mode 4'

Elastic Network - Mode 4

cRMS Plot - Mode 4
Mode 5

Elastic Network - Mode 5

cRMS Plot - Mode 4
Mode 6

Elastic network - Mode 6

cRMS Plot - Mode 6
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