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Prediction of Swissmodel. Target is HEXA_HUMAN, the template is 3CUI, chain A. Here you can see the secondary structure prediction based on the alignment. TARGET 9 SLLLAAAFAG RATALWPWPQ NFQTSDQRYV LYPNNFQFQY 3cuiA 1 attlkeaadg ---------- --agrdfgfa ldpn------ TARGET hhhhhh s ss sssss s sssssss 3cuiA hhhhhhh h sssss s TARGET 49 DVSSAAQPGC SVLDEAFQRY RDLLFGSGSW PRPYLTGKRH TLEKNVLVVS 3cuiA 23 ---------- rlseaqykai adsefn---- ---------l vvaenamkwd TARGET ssssss s hhhhhh hhh ssss s ssssss sssss 3cuiA hhhhh hhh s s ssss TARGET 99 VVTPGCNQLP TLESVENYTL TINDDQCLLL SETVWGALRG LETFSQLVWK 3cuiA 50 atepsqnsfs ---------- ---------- ----fgagdr vasyaadtgk TARGET ss s sssss s ssss ssshhhhh hhhhhhhh 3cuiA hhhhh hhhhhhhh TARGET 149 SAEGTFFINK TEIEDFPRFP HRGLLLDTSR HYLPLSSILD TLDVMAYNKL 3cuiA 76 elyghtlvwh sqlpdwakn- ---------- ---------- -lngsafesa TARGET hhh sssssss sssss ss hhhhhh 3cuiA sss hhhh hhhhhh TARGET 199 NVFHWHLVDD PSFPYESFTF PELMRKGSYN PVTHIYTAQD VKEVIEYARL 3cuiA 104 mvnhvtkvad ---------- ---------- ---------- ---------- TARGET hhhhhhhhh sss sss sssss sss ssssss sss 3cuiA hhhhhhhhhh TARGET 249 RGIRVLAEFD TPGHTLSWGP GIPGLLTPCY SGSEPSGTFG PVNPSLNNTY 3cuiA 114 ---------h fegkvaswd- ----vvneaf adgggrrqds afqqklgn-- TARGET sss sss sss ss s sss hhhhh 3cuiA h h ssss s ss s sss hhhhh TARGET 299 EFMSTFFLEV SSVFPDFYLH LGGDEVDFTC WKSNPEIQDF MRKKGFGEDF 3cuiA 148 gyietafraa raadptaklc indynvegin aksns-lydl vkd--fkarg TARGET hhhhhhhhh hhhsss ss sss 3cuiA hhhhhhhhhh hhh sss sss hhhhh hhhh hhh hhhh TARGET 349 KQLESFYIQT LLDIVSSYGK GYVVWQEVFD NKVKIQPDTI IQVWREDIPV 3cuiA 195 vpldcvgfqs hlivgqvpgd frqnlqrfad lgvdvr---- ---------- TARGET sssssss ssss sss hhhhhhhhhh sss sss ssss ssss 3cuiA sssssss ssss hhhhhhhhhh sss TARGET 399 NYMKELELVT KAGFRALLSA PWYLNRISYG PDWKDFYIVE PLAFEGTPEQ 3cuiA 231 --iteldirm rtps------ ----datkla tqaadykkvv qacmqvtrcq TARGET ssss ssss sssssss s ssss hhhhh hhhhhhhhhh hhhsss s 3cuiA ss ssss ss hhhhh hhhhhhhhhh hhhh s TARGET 449 KALVIGGEAC MWGEYVDNTN LVPRLWPRAG AVAERLWSNK LTSDLTFAYE 3cuiA 269 gvtvwg---- ----itdkys wvpdvfp--g egaalvwd-- ------asya TARGET sssssss s ssss hhhh s ssss 3cuiA ssss hhhh s ssss sss s TARGET 499 RLSHFRCELL RRGV 3cuiA 301 kkpayaavme afga- TARGET hhhhhhh h 3cuiA ss hhhhhhh h Back to [[http://i12r-studfilesrv.informatik.tu-muenchen.de/wiki/index.php/Homology-modelling_HEXA Homology modelling]].

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