Difference between revisions of "Sub Cellular Localization"

From Protein Prediction 2 Winter Semester 2014
(4. Roadmap)
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Sub Cellular Localization in Cell
 
Sub Cellular Localization in Cell
   
=== 1. Objective ===
+
== 1. Objective ===
   
 
"To visualize biological cells and highlight by a user selected sub-cellular compartments in a way that they stand out from the un-selected ones"
 
"To visualize biological cells and highlight by a user selected sub-cellular compartments in a way that they stand out from the un-selected ones"
   
=== 2. GUI mockups ===
+
== 2. GUI mockups ===
   
 
[[File:Mock1.png|thumb|center|700px|720px|Figure 1 : Number of Proteins in cell compartment]]
 
[[File:Mock1.png|thumb|center|700px|720px|Figure 1 : Number of Proteins in cell compartment]]
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***Score of each protein (confidence)
 
***Score of each protein (confidence)
   
=== 3. Application design ===
+
== 3. Application design ===
 
*Expected technical difficulties
 
*Expected technical difficulties
 
**Wrong file input format
 
**Wrong file input format

Revision as of 21:15, 19 November 2014

Sub Cellular Localization in Cell

1. Objective =

"To visualize biological cells and highlight by a user selected sub-cellular compartments in a way that they stand out from the un-selected ones"

2. GUI mockups =

Figure 1 : Number of Proteins in cell compartment
Figure 2 : Protein's score in cell compartment
  • User experience
    • Interactivity
    • Easy identification of the number of proteins in cell compartment
    • Good visualization of data
  • Functionality
    • Parsing the user input “txt” file
    • Mapping the file content into visualization
  • Features
    • Good color scheme to highlight :
      • Number of proteins in a compartment
      • Score of each protein (confidence)

3. Application design =

4. data

  • Remarks about input format
    • Text file must contain proteins of only one type of cell
    • Text file format :
      • Protein name
      • Score (certainty of existence of particular protein within a cell compartment)
      • Localization (component)
      • Gene Ontology Terms
Figure 3 : Text File format

5. Roadmap

Figure 4 : Roadmap