Difference between revisions of "Sub Cellular Localization"

From Protein Prediction 2 Winter Semester 2014
(4. Roadmap)
(4. data)
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***Gene Ontology Terms
 
***Gene Ontology Terms
   
[[File:Format.png|thumb|center|700px|720px|Text File format]]
+
[[File:Format.png|thumb|center|700px|720px|Figure 3 : Text File format]]
   
 
=== 4. Roadmap ===
 
=== 4. Roadmap ===

Revision as of 21:13, 19 November 2014

Sub Cellular Localization in Cell

1. Objective

"To visualize biological cells and highlight by a user selected sub-cellular compartments in a way that they stand out from the un-selected ones"

2. GUI mockups

Number of Proteins in cell compartment
Protein's score in cell compartment
  • User experience
    • Interactivity
    • Easy identification of the number of proteins in cell compartment
    • Good visualization of data
  • Functionality
    • Parsing the user input “txt” file
    • Mapping the file content into visualization
  • Features
    • Good color scheme to highlight :
      • Number of proteins in a compartment
      • Score of each protein (confidence)

3. Application design

4. data

  • Remarks about input format
    • Text file must contain proteins of only one type of cell
    • Text file format :
      • Protein name
      • Score (certainty of existence of particular protein within a cell compartment)
      • Localization (component)
      • Gene Ontology Terms
Figure 3 : Text File format

4. Roadmap

Figure 4 : Roadmap