Difference between revisions of "RNAMicro"
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= The RNA = |
= The RNA = |
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+ | From Wikipedia, the free encyclopedia |
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− | [[File:HEATMAP.png | 300px | center | Common RNA/DNA Visualization example.]] |
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+ | "A hairpin loop from a pre-mRNA. Highlighted are the nucleobases (green) and the ribose-phosphate backbone (blue). Note that this is a single strand of RNA that folds back upon itself. |
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− | = The Microarray |
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+ | Ribonucleic acid (RNA) is a polymeric molecule. It is implicated in a varied sort of biological roles in coding, decoding, regulation, and expression of genes. DNA and RNA are nucleic acids, and, along with proteins and carbohydrates, constitute the three major macromolecules essential for all known forms of life. Like DNA, RNA is assembled as a chain of nucleotides, but unlike DNA it is more often found in nature as a single-strand folded unto itself, rather than a paired double-strand. Cellular organisms use messenger RNA (mRNA) to convey genetic information (using the letters G, A, U, and C to denote the nitrogenous bases guanine, adenine, uracil and cytosine) that directs synthesis of specific proteins. Many viruses encode their genetic information using an RNA genome. |
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+ | Some RNA molecules play an active role within cells by catalyzing biological reactions, controlling gene expression, or sensing and communicating responses to cellular signals. One of these active processes is protein synthesis, a universal function whereby mRNA molecules direct the assembly of proteins on ribosomes. This process uses transfer RNA (tRNA) molecules to deliver amino acids to the ribosome, where ribosomal RNA (rRNA) links amino acids together to form protein". |
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+ | |||
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+ | = The Microarray = |
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= Existing visualisations = |
= Existing visualisations = |
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+ | [[File:HEATMAP.jpg | 300px | center | Common RNA/DNA Visualization example.]] |
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*Understand the RNA Data. |
*Understand the RNA Data. |
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− | *Try to compact |
+ | *Try to compact the data. |
*Create a prototype |
*Create a prototype |
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*Test the prototype |
*Test the prototype |
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*Ask for improvements and feedback. |
*Ask for improvements and feedback. |
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− | * |
+ | *Restart the prototyping -> developing -> testing cycle. |
*Upload the final version to BIOJS. |
*Upload the final version to BIOJS. |
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Revision as of 15:59, 24 November 2014
Contents
RNA Microarray
Introduction RNA
The RNA
From Wikipedia, the free encyclopedia
"A hairpin loop from a pre-mRNA. Highlighted are the nucleobases (green) and the ribose-phosphate backbone (blue). Note that this is a single strand of RNA that folds back upon itself.
Ribonucleic acid (RNA) is a polymeric molecule. It is implicated in a varied sort of biological roles in coding, decoding, regulation, and expression of genes. DNA and RNA are nucleic acids, and, along with proteins and carbohydrates, constitute the three major macromolecules essential for all known forms of life. Like DNA, RNA is assembled as a chain of nucleotides, but unlike DNA it is more often found in nature as a single-strand folded unto itself, rather than a paired double-strand. Cellular organisms use messenger RNA (mRNA) to convey genetic information (using the letters G, A, U, and C to denote the nitrogenous bases guanine, adenine, uracil and cytosine) that directs synthesis of specific proteins. Many viruses encode their genetic information using an RNA genome.
Some RNA molecules play an active role within cells by catalyzing biological reactions, controlling gene expression, or sensing and communicating responses to cellular signals. One of these active processes is protein synthesis, a universal function whereby mRNA molecules direct the assembly of proteins on ribosomes. This process uses transfer RNA (tRNA) molecules to deliver amino acids to the ribosome, where ribosomal RNA (rRNA) links amino acids together to form protein".
The Microarray
Existing visualisations
Tool's Objective
Roadmap
- Understand the RNA Data.
- Try to compact the data.
- Create a prototype
- Test the prototype
- Ask for improvements and feedback.
- Restart the prototyping -> developing -> testing cycle.
- Upload the final version to BIOJS.
People
References
http://en.wikipedia.org/wiki/RNA
http://jason.chuang.ca/research/xenopus/refseq.html?i=2332&j=2683&g=incenp&g=mkrn3&g=foxh1
http://en.wikibooks.org/wiki/An_Introduction_to_Molecular_Biology/RNA:The_ribonucleic_acid