Difference between revisions of "Project ideas"

From Protein Prediction 2 Winter Semester 2014
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Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de<br>
 
Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de<br>
Students:
+
Students: 2
   
 
==Graph Viewer==
 
==Graph Viewer==
   
 
Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de<br>
 
Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de<br>
Students:
+
Students: 2
  +
  +
==Gene Cluster Viewer==
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  +
Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de<br>
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Students: 2
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==Dot-Bracket Notation==
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Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de<br>
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Students: 2
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==Pedigree Charts Visualization==
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A pedigree chart is a simple and easy to read diagram showing the occurrence and appearance or phenotypes of a particular gene in an organism and its ancestors. Pedigrees use a standardized set of symbols:
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* squares: males
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* circles: females
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* diamonds: the sex of the person is unknown
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* filled-in (darker) symbol: someone with the phenotype in question
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* shaded or half-filled symbol: heterozygotes
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* horizontal and a vertical line: connects parents to their offspring
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* ....
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Literature:
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* [https://www.jsbi.org/pdfs/journal1/GIW00/GIW00F07.pdf Wong L. (2000) Visualization and manipulation of pedigree diagrams. Genome Informatics.]
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* [http://en.wikipedia.org/wiki/Pedigree_chart Wikipedia]
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Mentor: The mentors
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Students: 2
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[http://lh3.ggpht.com/-yUgZltPxHVk/UluYgMhfPPI/AAAAAAAAAI0/T2vL6QDFp30/s1600-h/image%25255B7%25255D.png | 500px | center | Pedigree chart]

Revision as of 13:38, 11 November 2014

Sequence Logo Viewer

Venn diagrams present a very popular method to display list comparisons. [Jvenn] is an interactive Venn diagram viewer written in JavaScript. The objective of this project would be to use the code base of Jvenn to make it compatible with BioJS2.0.
Literature: jvenn: an interactive Venn diagram viewer
Mentor: The PP2_CS_2014 mentors
Students: 2

Jvenn example


Protein viewer

Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de
Students: 2

Chemical Viewer

Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de
Students: 2

Graph Viewer

Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de
Students: 2

Gene Cluster Viewer

Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de
Students: 2

Dot-Bracket Notation

Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de
Students: 2

Pedigree Charts Visualization

A pedigree chart is a simple and easy to read diagram showing the occurrence and appearance or phenotypes of a particular gene in an organism and its ancestors. Pedigrees use a standardized set of symbols:

  • squares: males
  • circles: females
  • diamonds: the sex of the person is unknown
  • filled-in (darker) symbol: someone with the phenotype in question
  • shaded or half-filled symbol: heterozygotes
  • horizontal and a vertical line: connects parents to their offspring
  • ....

Literature:

Mentor: The mentors Students: 2

| 500px | center | Pedigree chart