# Difference between revisions of "Project ideas"

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Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de<br> |
Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de<br> |
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− | Students: |
+ | Students: 2 |

==Graph Viewer== |
==Graph Viewer== |
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Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de<br> |
Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de<br> |
||

− | Students: |
+ | Students: 2 |

+ | |||

+ | ==Gene Cluster Viewer== |
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+ | |||

+ | Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de<br> |
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+ | Students: 2 |
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+ | |||

+ | ==Dot-Bracket Notation== |
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+ | |||

+ | Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de<br> |
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+ | Students: 2 |
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+ | |||

+ | ==Pedigree Charts Visualization== |
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+ | A pedigree chart is a simple and easy to read diagram showing the occurrence and appearance or phenotypes of a particular gene in an organism and its ancestors. Pedigrees use a standardized set of symbols: |
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+ | * squares: males |
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+ | * circles: females |
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+ | * diamonds: the sex of the person is unknown |
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+ | * filled-in (darker) symbol: someone with the phenotype in question |
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+ | * shaded or half-filled symbol: heterozygotes |
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+ | * horizontal and a vertical line: connects parents to their offspring |
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+ | * .... |
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+ | Literature: |
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+ | * [https://www.jsbi.org/pdfs/journal1/GIW00/GIW00F07.pdf Wong L. (2000) Visualization and manipulation of pedigree diagrams. Genome Informatics.] |
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+ | * [http://en.wikipedia.org/wiki/Pedigree_chart Wikipedia] |
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+ | Mentor: The mentors |
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+ | Students: 2 |
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+ | |||

+ | [http://lh3.ggpht.com/-yUgZltPxHVk/UluYgMhfPPI/AAAAAAAAAI0/T2vL6QDFp30/s1600-h/image%25255B7%25255D.png | 500px | center | Pedigree chart] |

## Revision as of 14:38, 11 November 2014

## Contents

## Sequence Logo Viewer

Venn diagrams present a very popular method to display list comparisons. [Jvenn] is an interactive Venn diagram viewer written in JavaScript. The objective of this project would be to use the code base of Jvenn to make it compatible with BioJS2.0.

Literature: jvenn: an interactive Venn diagram viewer

Mentor: The PP2_CS_2014 mentors

Students: 2

## Protein viewer

Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de

Students: 2

## Chemical Viewer

Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de

Students: 2

## Graph Viewer

Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de

Students: 2

## Gene Cluster Viewer

Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de

Students: 2

## Dot-Bracket Notation

Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de

Students: 2

## Pedigree Charts Visualization

A pedigree chart is a simple and easy to read diagram showing the occurrence and appearance or phenotypes of a particular gene in an organism and its ancestors. Pedigrees use a standardized set of symbols:

- squares: males
- circles: females
- diamonds: the sex of the person is unknown
- filled-in (darker) symbol: someone with the phenotype in question
- shaded or half-filled symbol: heterozygotes
- horizontal and a vertical line: connects parents to their offspring
- ....

Literature:

Mentor: The mentors Students: 2