Difference between revisions of "Homework 5"

From Protein Prediction 2 Winter Semester 2014
(Tasks, due Nov 20)
(Tasks, due Nov 20)
 
(8 intermediate revisions by 2 users not shown)
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| Sven Punga, Benedikt Rauscher || Dot-Bracket Notation (2) || Björn Grüning || [https://i12r-studfilesrv.informatik.tu-muenchen.de/pp22014/index.php/Dot-Bracket_Notation Dot-Bracket Notation] || [[:File:Pp2-präsi.pdf]]
 
| Sven Punga, Benedikt Rauscher || Dot-Bracket Notation (2) || Björn Grüning || [https://i12r-studfilesrv.informatik.tu-muenchen.de/pp22014/index.php/Dot-Bracket_Notation Dot-Bracket Notation] || [[:File:Pp2-präsi.pdf]]
 
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| Enrico Gigantiello, Sai Kiran Krishna Murthy, Carlo Di Domenico || Parser for GenBank format and visualization of annotations || Khalil El Mazouari || [https://i12r-studfilesrv.informatik.tu-muenchen.de/pp22014/index.php/Parsing_And_Visualization_Of_GeneBank Genebank Parser] || [[:File:GeneBank_Parsing_Blueprint_.pdf‎]]
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| Enrico Gigantiello, Sai Kiran Krishna Murthy, Carlo Di Domenico || Parser for GenBank format and visualization of annotations || Khalil El Mazouari || [https://i12r-studfilesrv.informatik.tu-muenchen.de/pp22014/index.php/Parsing_And_Visualization_Of_GenBank Genbank Parser] || [[:File:GeneBank_Parsing_Blueprint_.pdf‎]]
 
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| Prapaporn Dangnoy, Madhura Kumaraswamy, Maribel Guzman || Sub-cellular localization in a cell || Tatyana, Juanmi || [https://i12r-studfilesrv.informatik.tu-muenchen.de/pp22014/index.php/Sub_Cellular_Localization Sub-cellular Localization in a cell] || [[:File:3BioGirls_Presentation1.pdf‎]]
 
| Prapaporn Dangnoy, Madhura Kumaraswamy, Maribel Guzman || Sub-cellular localization in a cell || Tatyana, Juanmi || [https://i12r-studfilesrv.informatik.tu-muenchen.de/pp22014/index.php/Sub_Cellular_Localization Sub-cellular Localization in a cell] || [[:File:3BioGirls_Presentation1.pdf‎]]
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| Akshit Malhotra, Vinod Rajendran, Irman Abdic || Visualization of iAnn events || Manuel Corpas || [https://i12r-studfilesrv.informatik.tu-muenchen.de/pp22014/index.php/Main_Page/VisualizationiAnnEvents Visualization of iAnn events] ||
 
| Akshit Malhotra, Vinod Rajendran, Irman Abdic || Visualization of iAnn events || Manuel Corpas || [https://i12r-studfilesrv.informatik.tu-muenchen.de/pp22014/index.php/Main_Page/VisualizationiAnnEvents Visualization of iAnn events] ||
 
[[:File:Visualization_iAnn_viewer.pdf‎‎]]
 
[[:File:Visualization_iAnn_viewer.pdf‎‎]]
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| Ying Li, Yue Xie || Visualization of events on the GOBLET platform || Manuel Corpas || [https://i12r-studfilesrv.informatik.tu-muenchen.de/pp22014/index.php/Main_Page/VisualizationGOBLET Visualization of events on the GOBLET platform] || [[:File: GOBLETBlueprint.pdf‎]]
 
 
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|Homa Rasouli, Sebastian Wilzbach || BLAST Visualization || Xavier Watkins || [https://i12r-studfilesrv.informatik.tu-muenchen.de/pp22014/index.php/BLAST_Visualization BLAST Visualization] || [[:File:Blast-Visoalization.pdf]]
 
|Homa Rasouli, Sebastian Wilzbach || BLAST Visualization || Xavier Watkins || [https://i12r-studfilesrv.informatik.tu-muenchen.de/pp22014/index.php/BLAST_Visualization BLAST Visualization] || [[:File:Blast-Visoalization.pdf]]
 
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| Ahsan ziaullah, Vasantha kumari kommanapalli, Anuradha Ganapathi || FORCE DIRECTED NETWORK (SPRING ALGORITHM) GRAPH VIEWER || PP2_CS_2014 mentors, Sebastian , Björn Grüning || [https://i12r-studfilesrv.informatik.tu-muenchen.de/pp22014/index.php/FORCE_DIRECTED_NETWORK_%28SPRING_ALGORITHM%29_GRAPH_VIEWER#Application_Design FORCE DIRECTED NETWORK] || [[:File:Blue_Print.pdf‎]]
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| Ahsan ziaullah, Vasantha kumari kommanapalli, Anuradha Ganapathi || FORCE DIRECTED NETWORK (SPRING ALGORITHM) GRAPH VIEWER || Sebastian, David, Björn Grüning || [https://i12r-studfilesrv.informatik.tu-muenchen.de/pp22014/index.php/FORCE_DIRECTED_NETWORK_%28SPRING_ALGORITHM%29_GRAPH_VIEWER#Application_Design FORCE DIRECTED NETWORK] || [[:File:Blue_Print.pdf‎]]
 
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|Habtom Kahsay Gidey, Mohamed Ahmed, Chung Kin Shing || Gene List Venn Diagram Visualization || David, Sebastian || [https://i12r-studfilesrv.informatik.tu-muenchen.de/pp22014/index.php/Venn_Project gene.list.venn.project] || [[File:VennProject.pdf]]
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|Habtom Kahsay Gidey, Mohamed Ahmed || Gene List Venn Diagram Visualization || David, Sebastian || [https://i12r-studfilesrv.informatik.tu-muenchen.de/pp22014/index.php/Venn_Project gene.list.venn.project] || [[File:VennProject.pdf]]
 
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| Agon Lohaj, Bardh, Lohaj || HSSP Curve || Juanmi, Tatyana || [https://i12r-studfilesrv.informatik.tu-muenchen.de/pp22014/index.php/HSSP_curve HSSP Curve] || [[:File:HSSP_Curve_Visualisation_Project_Blueprint.pdf‎]]
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| Agon Lohaj, Bardh, Lohaj || HSSP Curve || Juanmi, Tatyana || [http://agonlohaj.github.io/hssp_curve/ HSSP Live Example] || [[:File:HSSP_Curve_Visualisation_Project_Blueprint.pdf‎]]
 
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| Matheus Raszl, Diana Papyan || RNA Microarray || PP2_CS_2014 mentors || Will be uploaded. ||
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| Matheus Raszl, Diana Papyan || RNA Microarray || Tatyana, Juanmi || [https://i12r-studfilesrv.informatik.tu-muenchen.de/pp22014/index.php/RNAMicro RNA Microarray] ||
 
[[:File:PP2_WS1415_RASZL_PAPYAN.pdf]]
 
[[:File:PP2_WS1415_RASZL_PAPYAN.pdf]]
 
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Latest revision as of 23:03, 28 January 2015

Tasks, due Nov 20

  • get in contact with your mentor(s)
  • create a wiki entry for your project and link it here
  • create a blueprint for your component (3-4 min. presentation to the course), upload the file in pdf on our wiki (using the 'Upload file' on the left side of the wiki page) and link it in the table below
Student names Project name (expected # of students) Mentor(s) Wiki entry Blueprint (pdf)
Sven Punga, Benedikt Rauscher Dot-Bracket Notation (2) Björn Grüning Dot-Bracket Notation File:Pp2-präsi.pdf
Enrico Gigantiello, Sai Kiran Krishna Murthy, Carlo Di Domenico Parser for GenBank format and visualization of annotations Khalil El Mazouari Genbank Parser File:GeneBank_Parsing_Blueprint_.pdf‎
Prapaporn Dangnoy, Madhura Kumaraswamy, Maribel Guzman Sub-cellular localization in a cell Tatyana, Juanmi Sub-cellular Localization in a cell File:3BioGirls_Presentation1.pdf‎
Akshit Malhotra, Vinod Rajendran, Irman Abdic Visualization of iAnn events Manuel Corpas Visualization of iAnn events

File:Visualization_iAnn_viewer.pdf‎‎

Homa Rasouli, Sebastian Wilzbach BLAST Visualization Xavier Watkins BLAST Visualization File:Blast-Visoalization.pdf
Ahsan ziaullah, Vasantha kumari kommanapalli, Anuradha Ganapathi FORCE DIRECTED NETWORK (SPRING ALGORITHM) GRAPH VIEWER Sebastian, David, Björn Grüning FORCE DIRECTED NETWORK File:Blue_Print.pdf‎
Habtom Kahsay Gidey, Mohamed Ahmed Gene List Venn Diagram Visualization David, Sebastian gene.list.venn.project File:VennProject.pdf
Agon Lohaj, Bardh, Lohaj HSSP Curve Juanmi, Tatyana HSSP Live Example File:HSSP_Curve_Visualisation_Project_Blueprint.pdf‎
Matheus Raszl, Diana Papyan RNA Microarray Tatyana, Juanmi RNA Microarray

File:PP2_WS1415_RASZL_PAPYAN.pdf