Difference between revisions of "HSSP curve"

From Protein Prediction 2 Winter Semester 2014
Line 36: Line 36:
= People =
* [mailto:bardh.lohaj@gmail.com Bardh Lohaj]
* [mailto:agon.lohaj@gmail.com Agon Lohaj]
== References ==
== References ==

Revision as of 11:32, 20 November 2014

Introduction to HSSP curve?

HSSP is a derived database merging structural (3-D) and sequence (1-D) information. For each protein of known 3-D structure from the Protein Data Bank (PDB), the database has a multiple sequence alignment of all available homologues and a sequence profile characteristic of the family. The list of homologues is the result of a database search in SwissProt using a position-weighted dynamic programming method for sequence profile alignment (MaxHom). The database is updated frequently. The listed homologues are very likely to have the same 3-D structure as the PDB protein to which they have been aligned. As a result, the database is not only a database of aligned sequence families, but also a database of implied secondary and tertiary structures covering 29% of all SwissProt-stored sequences.

Different thresholds for HSSP-curve
Different thresholds for HSSP-curve

Existing visualisations

Core Functionalities


Task Implemented
Core Functionality No
Drag nodes No
Display additional info on mouse-over No
Edit graph and export changes No
PBseq format compatibility No
Connect (.ct) format compatibility No