User talk:Ppwikiuser

BLAST visualization

The aim of this project is to build a BioJS component to visualise BLAST results in the context ofprotein information. The visualisation will display alignments in context (showing how much of the total protein is part of the alignment) alongside protein features. There should also be a way to visualise the alignment at the amino-acid level.

Description

In the mockup above, the query sequence (black) is displayed over the subject (red). The part of both sequences which constitutes the alignment are positioned together. The scale of both the query and subject are represented, both showing the full length of the each sequences (numbered scales at the top and bottom of the mockup). Protein features are displayed underneath the subject.

Blast description

Technical details

• The visualisation uses the biojs-io-blast module to read from a BLAST xml file (EBI format).
• The code is under this repository github.com/xwatkins/biojs-vis-blast

People

• Sebastian Wilzbach
• Homa Rasouli