Difference between revisions of "Sub Cellular Localization"
From Protein Prediction 2 Winter Semester 2014
Ppwikiuser (talk | contribs) (→Data) |
Ppwikiuser (talk | contribs) (→Data) |
||
Line 45: | Line 45: | ||
− | [[File:Format2.png|thumb|center|700px|720px|Figure |
+ | [[File:Format2.png|thumb|center|700px|720px|Figure 4 : Text File format]] |
= Roadmap = |
= Roadmap = |
Revision as of 15:26, 27 November 2014
Sub Cellular Localization in Cell
Objective
"To visualize biological cells and highlight by a user selected sub-cellular compartments in a way that they stand out from the un-selected ones"
GUI mockups
- User experience
- Interactivity
- Easy identification of the number of proteins in cell compartment
- Good visualization of data
- Functionality
- Parsing the user input “txt” file
- Mapping the file content into visualization
- Features
- Good color scheme to highlight :
- Number of proteins in a compartment
- Score of each protein (confidence)
- Good color scheme to highlight :
Application design
- Expected technical difficulties
- Wrong file input format
- Correct identification of localization
- Libraries
Data
- Remarks about input format
- Text file must contain proteins of only one type of cell
- Text file format :
- Cell type (File’s first line)
- Protein id
- Score (certainty of existence of particular protein within a cell compartment)
- Localization (component)
- User’s file can have more than 3 columns but additional columns will not be executed
Roadmap
Week number | Completed tasks | Status |
---|---|---|
Week 1 |
|
|
Week 2 |
|
|
Week 3 |
|
|
Week 4 |
|
|
Week 5 |
|
|