Difference between revisions of "Sub Cellular Localization"
From Protein Prediction 2 Winter Semester 2014
Ppwikiuser (talk | contribs) |
Ppwikiuser (talk | contribs) (→Data) |
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*Remarks about input format |
*Remarks about input format |
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| − | ** |
+ | **Each text file must contain proteins of only one type of cell |
| − | **Text file format |
+ | **Text file format: |
| − | ***Protein |
+ | ***Protein id |
***Score (certainty of existence of particular protein within a cell compartment) |
***Score (certainty of existence of particular protein within a cell compartment) |
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***Localization (component) |
***Localization (component) |
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| + | ***Cell type |
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| − | ***Gene Ontology Terms |
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[[File:Format.png|thumb|center|700px|720px|Figure 3 : Text File format]] |
[[File:Format.png|thumb|center|700px|720px|Figure 3 : Text File format]] |
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Revision as of 20:27, 26 November 2014
Sub Cellular Localization in Cell
Objective
"To visualize biological cells and highlight by a user selected sub-cellular compartments in a way that they stand out from the un-selected ones"
GUI mockups
- User experience
- Interactivity
- Easy identification of the number of proteins in cell compartment
- Good visualization of data
- Functionality
- Parsing the user input “txt” file
- Mapping the file content into visualization
- Features
- Good color scheme to highlight :
- Number of proteins in a compartment
- Score of each protein (confidence)
- Good color scheme to highlight :
Application design
- Expected technical difficulties
- Wrong file input format
- Correct identification of localization
- Libraries
Data
- Remarks about input format
- Each text file must contain proteins of only one type of cell
- Text file format:
- Protein id
- Score (certainty of existence of particular protein within a cell compartment)
- Localization (component)
- Cell type
