Difference between revisions of "Sub Cellular Localization"
From Protein Prediction 2 Winter Semester 2014
Ppwikiuser (talk | contribs) (→Roadmap) |
Ppwikiuser (talk | contribs) (→Roadmap) |
||
Line 75: | Line 75: | ||
! Week 3 |
! Week 3 |
||
| |
| |
||
− | * Visualization by |
+ | * Visualization by: |
− | ** Grouping proteins based on localization in the cell component |
+ | ** Grouping proteins based on localization in the cell component. |
− | ** Updating cell’s compartments based on particular protein’s score (Confidence) |
+ | ** Updating cell’s compartments based on particular protein’s score (Confidence). |
|- |
|- |
||
Revision as of 21:15, 26 November 2014
Sub Cellular Localization in Cell
Objective
"To visualize biological cells and highlight by a user selected sub-cellular compartments in a way that they stand out from the un-selected ones"
GUI mockups
- User experience
- Interactivity
- Easy identification of the number of proteins in cell compartment
- Good visualization of data
- Functionality
- Parsing the user input “txt” file
- Mapping the file content into visualization
- Features
- Good color scheme to highlight :
- Number of proteins in a compartment
- Score of each protein (confidence)
- Good color scheme to highlight :
Application design
- Expected technical difficulties
- Wrong file input format
- Correct identification of localization
- Libraries
Data
- Remarks about input format
- Each text file must contain proteins of only one type of cell
- Text file format:
- Protein id
- Score (certainty of existence of particular protein within a cell compartment)
- Localization (component)
- Cell type
Roadmap
Week number | Completed tasks |
---|---|
Week 1 |
|
Week 2 |
|
Week 3 |
|
Week 4 |
|