Difference between revisions of "Sub Cellular Localization"
From Protein Prediction 2 Winter Semester 2014
Ppwikiuser (talk | contribs) |
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"To visualize biological cells and highlight by a user selected sub-cellular compartments in a way that they stand out from the un-selected ones" |
"To visualize biological cells and highlight by a user selected sub-cellular compartments in a way that they stand out from the un-selected ones" |
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| − | + | = 2. GUI mockups = |
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[[File:Mock1.png|thumb|center|700px|720px|Figure 1 : Number of Proteins in cell compartment]] |
[[File:Mock1.png|thumb|center|700px|720px|Figure 1 : Number of Proteins in cell compartment]] |
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***Score of each protein (confidence) |
***Score of each protein (confidence) |
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*Expected technical difficulties |
*Expected technical difficulties |
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**Wrong file input format |
**Wrong file input format |
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***https://live.zoomdata.com/zoomdata/visualization#51db7ad4e4b04caf9ab346db-51db7ad4e4b04caf9ab346d5 |
***https://live.zoomdata.com/zoomdata/visualization#51db7ad4e4b04caf9ab346db-51db7ad4e4b04caf9ab346d5 |
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| − | + | = 4. data = |
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*Remarks about input format |
*Remarks about input format |
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[[File:Format.png|thumb|center|700px|720px|Figure 3 : Text File format]] |
[[File:Format.png|thumb|center|700px|720px|Figure 3 : Text File format]] |
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| − | + | = 5. Roadmap = |
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[[File:Roadmap.png|thumb|center|700px|720px|Figure 4 : Roadmap]] |
[[File:Roadmap.png|thumb|center|700px|720px|Figure 4 : Roadmap]] |
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Revision as of 22:16, 19 November 2014
Sub Cellular Localization in Cell
1. Objective
"To visualize biological cells and highlight by a user selected sub-cellular compartments in a way that they stand out from the un-selected ones"
2. GUI mockups
- User experience
- Interactivity
- Easy identification of the number of proteins in cell compartment
- Good visualization of data
- Functionality
- Parsing the user input “txt” file
- Mapping the file content into visualization
- Features
- Good color scheme to highlight :
- Number of proteins in a compartment
- Score of each protein (confidence)
- Good color scheme to highlight :
3. Application design
- Expected technical difficulties
- Wrong file input format
- Correct identification of localization
- Libraries
4. data
- Remarks about input format
- Text file must contain proteins of only one type of cell
- Text file format :
- Protein name
- Score (certainty of existence of particular protein within a cell compartment)
- Localization (component)
- Gene Ontology Terms
