Difference between revisions of "Project ideas"
Line 16: | Line 16: | ||
Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de<br> |
Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de<br> |
||
− | Students: |
+ | Students: 2 |
==Graph Viewer== |
==Graph Viewer== |
||
Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de<br> |
Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de<br> |
||
− | Students: |
+ | Students: 2 |
+ | |||
+ | ==Gene Cluster Viewer== |
||
+ | |||
+ | Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de<br> |
||
+ | Students: 2 |
||
+ | |||
+ | ==Dot-Bracket Notation== |
||
+ | |||
+ | Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de<br> |
||
+ | Students: 2 |
||
+ | |||
+ | ==Pedigree Charts Visualization== |
||
+ | A pedigree chart is a simple and easy to read diagram showing the occurrence and appearance or phenotypes of a particular gene in an organism and its ancestors. Pedigrees use a standardized set of symbols: |
||
+ | * squares: males |
||
+ | * circles: females |
||
+ | * diamonds: the sex of the person is unknown |
||
+ | * filled-in (darker) symbol: someone with the phenotype in question |
||
+ | * shaded or half-filled symbol: heterozygotes |
||
+ | * horizontal and a vertical line: connects parents to their offspring |
||
+ | * .... |
||
+ | Literature: |
||
+ | * [https://www.jsbi.org/pdfs/journal1/GIW00/GIW00F07.pdf Wong L. (2000) Visualization and manipulation of pedigree diagrams. Genome Informatics.] |
||
+ | * [http://en.wikipedia.org/wiki/Pedigree_chart Wikipedia] |
||
+ | Mentor: The mentors |
||
+ | Students: 2 |
||
+ | |||
+ | [http://lh3.ggpht.com/-yUgZltPxHVk/UluYgMhfPPI/AAAAAAAAAI0/T2vL6QDFp30/s1600-h/image%25255B7%25255D.png | 500px | center | Pedigree chart] |
Revision as of 14:38, 11 November 2014
Contents
Sequence Logo Viewer
Venn diagrams present a very popular method to display list comparisons. [Jvenn] is an interactive Venn diagram viewer written in JavaScript. The objective of this project would be to use the code base of Jvenn to make it compatible with BioJS2.0.
Literature: jvenn: an interactive Venn diagram viewer
Mentor: The PP2_CS_2014 mentors
Students: 2
Protein viewer
Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de
Students: 2
Chemical Viewer
Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de
Students: 2
Graph Viewer
Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de
Students: 2
Gene Cluster Viewer
Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de
Students: 2
Dot-Bracket Notation
Mentor: Björn Grüning (Galaxy) gruening. (at) .informatik.uni-freiburg.de
Students: 2
Pedigree Charts Visualization
A pedigree chart is a simple and easy to read diagram showing the occurrence and appearance or phenotypes of a particular gene in an organism and its ancestors. Pedigrees use a standardized set of symbols:
- squares: males
- circles: females
- diamonds: the sex of the person is unknown
- filled-in (darker) symbol: someone with the phenotype in question
- shaded or half-filled symbol: heterozygotes
- horizontal and a vertical line: connects parents to their offspring
- ....
Literature:
Mentor: The mentors Students: 2