Difference between revisions of "Sub Cellular Localization"
From Protein Prediction 2 Winter Semester 2014
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**Correct identification of localization |
**Correct identification of localization |
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*Libraries |
*Libraries |
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− | <s> |
+ | **<s>DHTML, JavaScript Draw Line, Circle, Ellipse (Oval), Polyline, Polygon, Rectangle</s> |
− | ***http://www.walterzorn.de/en/jsgraphics/jsgraphics_e.htm |
+ | ***<s>http://www.walterzorn.de/en/jsgraphics/jsgraphics_e.htm</s> |
− | **Image map generator |
+ | **<s>Image map generator</s> |
− | ***http://imagemap-generator.dariodomi.de/ |
+ | ***<s>http://imagemap-generator.dariodomi.de/</s> |
− | </s> |
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**D3 Data-Driven Documents - http://d3js.org/ |
**D3 Data-Driven Documents - http://d3js.org/ |
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***https://github.com/mbostock/d3/blob/master/d3.min.js |
***https://github.com/mbostock/d3/blob/master/d3.min.js |
Revision as of 13:35, 2 January 2015
Sub Cellular Localization in Cell
Contents
Objective
"To visualize biological cells and highlight by a user selected sub-cellular compartments in a way that they stand out from the un-selected ones"
GUI mockups
- User experience
- Interactivity
- Easy identification of the number of proteins in cell compartment
- Good visualization of data
- Functionality
- Parsing the user input “txt” file
- Mapping the file content into visualization
- Features
- Good color scheme to highlight :
- Number of proteins in a compartment
- Score of each protein (confidence)
- Good color scheme to highlight :
Application design
- Expected technical difficulties
- Wrong file input format
- Correct identification of localization
- Libraries
DHTML, JavaScript Draw Line, Circle, Ellipse (Oval), Polyline, Polygon, RectangleImage map generator- D3 Data-Driven Documents - http://d3js.org/
Data
- Remarks about input format
- Text file must contain proteins of only one type of cell
- Text file format :
- Cell type (File’s first line)
- Protein id
- Score (certainty of existence of particular protein within a cell compartment)
- Localization (component)
- User’s file can have more than 3 columns but additional columns will not be executed
Roadmap
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Implementation
GitHub Link
The link to the GitHub account is : GitHub Sub-cellular localization in cell