Difference between revisions of "Sub Cellular Localization"
From Protein Prediction 2 Winter Semester 2014
Ppwikiuser (talk | contribs) (→Data) |
Ppwikiuser (talk | contribs) (→Roadmap) |
||
Line 46: | Line 46: | ||
[[File:Roadmap.png|thumb|center|700px|720px|Figure 4 : Roadmap]] |
[[File:Roadmap.png|thumb|center|700px|720px|Figure 4 : Roadmap]] |
||
+ | |||
+ | |||
+ | {| class="wikitable" |
||
+ | |- |
||
+ | ! HeaderR0C1 !! HeaderR0C2 !! HeaderR0C3 |
||
+ | |- |
||
+ | | ExampleR1C1 || ExampleR1C2 || ExampleR1C3 |
||
+ | |- |
||
+ | | ExampleR2C1 || ExampleR2C2 || ExampleR2C3 |
||
+ | |- |
||
+ | | ExampleR3C1 || ExampleR3C2 || ExampleR3C3 |
||
+ | |} |
Revision as of 20:29, 26 November 2014
Sub Cellular Localization in Cell
Objective
"To visualize biological cells and highlight by a user selected sub-cellular compartments in a way that they stand out from the un-selected ones"
GUI mockups
- User experience
- Interactivity
- Easy identification of the number of proteins in cell compartment
- Good visualization of data
- Functionality
- Parsing the user input “txt” file
- Mapping the file content into visualization
- Features
- Good color scheme to highlight :
- Number of proteins in a compartment
- Score of each protein (confidence)
- Good color scheme to highlight :
Application design
- Expected technical difficulties
- Wrong file input format
- Correct identification of localization
- Libraries
Data
- Remarks about input format
- Each text file must contain proteins of only one type of cell
- Text file format:
- Protein id
- Score (certainty of existence of particular protein within a cell compartment)
- Localization (component)
- Cell type
Roadmap
HeaderR0C1 | HeaderR0C2 | HeaderR0C3 |
---|---|---|
ExampleR1C1 | ExampleR1C2 | ExampleR1C3 |
ExampleR2C1 | ExampleR2C2 | ExampleR2C3 |
ExampleR3C1 | ExampleR3C2 | ExampleR3C3 |